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  5. Zm00001d030579_T001

Zm00001d030579_T001


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0006678 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006678_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d030579_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d030579_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_66


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom ProSiteProfiles 102 181
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 13 93
IPR000504 RRM_dom Pfam 16 83
IPR000504 RRM_dom Pfam 104 164
IPR035979 RBD_domain_sf SUPERFAMILY 11 92
IPR000504 RRM_dom ProSiteProfiles 14 90
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 95 206
IPR000504 RRM_dom SMART 15 86
IPR000504 RRM_dom SMART 103 177
IPR035979 RBD_domain_sf SUPERFAMILY 95 210
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 13 93
IPR000504 RRM_dom Pfam 104 165
IPR000504 RRM_dom Pfam 16 83
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 95 206
IPR000504 RRM_dom ProSiteProfiles 102 181
IPR000504 RRM_dom ProSiteProfiles 14 90
IPR035979 RBD_domain_sf SUPERFAMILY 95 210
IPR035979 RBD_domain_sf SUPERFAMILY 11 92
IPR000504 RRM_dom SMART 15 86
IPR000504 RRM_dom SMART 103 177

No CAZYmes available for this sequence

No external refs found!