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Description : genomes uncoupled 1
Gene families : OG_01_0003414 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003414_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d030624_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d030624_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_177 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_129 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 482 | 581 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 454 | 488 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 168 | 294 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 489 | 523 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 384 | 418 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 243 | 277 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 309 | 341 |
| IPR002625 | Smr_dom | SMART | 745 | 837 |
| IPR002625 | Smr_dom | ProSiteProfiles | 748 | 837 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 453 | 500 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 524 | 572 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 349 | 397 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 412 | 481 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 524 | 558 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 218 | 469 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 247 | 291 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 624 | 650 |
| IPR036063 | Smr_dom_sf | SUPERFAMILY | 746 | 826 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 419 | 453 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 280 | 314 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 421 | 454 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 456 | 489 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 492 | 525 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 351 | 385 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 527 | 560 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 246 | 278 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 317 | 345 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 386 | 419 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 278 | 313 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 605 | 753 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 295 | 411 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 349 | 383 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 314 | 348 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 421 | 451 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 624 | 650 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 243 | 277 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 246 | 278 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 421 | 454 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 317 | 345 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 351 | 385 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 386 | 419 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 280 | 314 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 527 | 560 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 492 | 525 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 456 | 489 |
| IPR002625 | Smr_dom | SMART | 745 | 837 |
| IPR033443 | PPR_long | Pfam | 281 | 439 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 314 | 348 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 412 | 481 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 605 | 753 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 295 | 411 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 384 | 418 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 419 | 453 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 349 | 383 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 278 | 313 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 453 | 499 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 524 | 571 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 247 | 275 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 482 | 581 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 218 | 469 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 524 | 558 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 168 | 294 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 489 | 523 |
| IPR002625 | Smr_dom | ProSiteProfiles | 748 | 837 |
| IPR036063 | Smr_dom_sf | SUPERFAMILY | 746 | 826 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 454 | 488 |
No CAZYmes available for this sequence
| No external refs found! |