Zm00001d030901_T001

Description : pentatricopeptide (PPR) repeat-containing protein

Gene families : OG_01_0006586 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006586_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d030901_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d030901_T001	No neighbors in network
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_187

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011990	TPR-like_helical_dom_sf	Gene3D	19	146
IPR011990	TPR-like_helical_dom_sf	Gene3D	147	251
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	189	223
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	290	324
IPR002885	Pentatricopeptide_rpt	Pfam	264	284
IPR002885	Pentatricopeptide_rpt	Pfam	86	116
IPR002885	Pentatricopeptide_rpt	Pfam	365	389
IPR002885	Pentatricopeptide_rpt	Pfam	188	235
IPR002885	Pentatricopeptide_rpt	Pfam	290	337
IPR011990	TPR-like_helical_dom_sf	Gene3D	290	485
IPR002885	Pentatricopeptide_rpt	NCBIfam	292	325
IPR002885	Pentatricopeptide_rpt	NCBIfam	191	224
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	84	118
IPR045215	PPR_prot_At1g15510	PANTHER	223	487
IPR046848	E_motif	Pfam	408	470
IPR002885	Pentatricopeptide_rpt	Pfam	365	389
IPR002885	Pentatricopeptide_rpt	Pfam	292	322
IPR002885	Pentatricopeptide_rpt	Pfam	86	116
IPR002885	Pentatricopeptide_rpt	Pfam	264	284
IPR002885	Pentatricopeptide_rpt	Pfam	188	235
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	84	118
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	290	324
IPR002885	Pentatricopeptide_rpt	TIGRFAM	292	325
IPR002885	Pentatricopeptide_rpt	TIGRFAM	191	224
IPR011990	TPR-like_helical_dom_sf	Gene3D	19	146
IPR011990	TPR-like_helical_dom_sf	Gene3D	147	251
IPR011990	TPR-like_helical_dom_sf	Gene3D	290	485
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	189	223
IPR045215	PPR_prot_At1g15510	PANTHER	11	508

No CAZYmes available for this sequence

External Links

No external refs found!