Zm00001d031013_T002

Description : methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA)

Gene families : OG_01_0005868 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005868_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d031013_T002
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d031013_T002
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_142
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_120

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045774	MCCA_BT_dom	Pfam	509	665
IPR005482	Biotin_COase_C	SMART	389	496
IPR011053	Single_hybrid_motif	SUPERFAMILY	670	745
IPR001882	Biotin_BS	ProSitePatterns	702	719
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	339	346
IPR005482	Biotin_COase_C	Pfam	389	497
IPR000089	Biotin_lipoyl	ProSiteProfiles	668	746
IPR011764	Biotin_carboxylation_dom	ProSiteProfiles	53	500
IPR000089	Biotin_lipoyl	Pfam	680	745
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	205	219
IPR011054	Rudment_hybrid_motif	SUPERFAMILY	384	500
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	Pfam	167	375
IPR011761	ATP-grasp	ProSiteProfiles	172	370
IPR016185	PreATP-grasp_dom_sf	SUPERFAMILY	53	165
IPR005481	BC-like_N	Pfam	54	162
IPR011761	ATP-grasp	ProSiteProfiles	172	370
IPR011054	Rudment_hybrid_motif	SUPERFAMILY	384	500
IPR011053	Single_hybrid_motif	SUPERFAMILY	670	745
IPR001882	Biotin_BS	ProSitePatterns	702	719
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	339	346
IPR045774	MCCA_BT_dom	Pfam	508	665
IPR005482	Biotin_COase_C	Pfam	389	497
IPR005482	Biotin_COase_C	SMART	389	496
IPR000089	Biotin_lipoyl	ProSiteProfiles	668	746
IPR000089	Biotin_lipoyl	Pfam	680	745
IPR011764	Biotin_carboxylation_dom	ProSiteProfiles	53	500
IPR005481	BC-like_N	Pfam	54	162
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	ProSitePatterns	205	219
IPR005479	CbamoylP_synth_lsu-like_ATP-bd	Pfam	167	375
IPR016185	PreATP-grasp_dom_sf	SUPERFAMILY	53	165

No CAZYmes available for this sequence

External Links

No external refs found!