Zm00001d031102_T001

Description : Nucleotide excision repair, TFIIH, subunit TTDA

Gene families : OG_01_0003336 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003336_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d031102_T001
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_181

Type	GO Term	Name	Evidence	Source
CC	GO:0000439	transcription factor TFIIH core complex	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	ISM	GOs from InterProScan
BP	GO:0006352	DNA-templated transcription initiation	None	Extended
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR009400	TFIIH_TTDA/Tfb5	PANTHER	23	87
IPR009400	TFIIH_TTDA/Tfb5	SMART	23	85
IPR009400	TFIIH_TTDA/Tfb5	Pfam	23	85
IPR035935	TFB5-like_sf	Gene3D	15	86
IPR035935	TFB5-like_sf	SUPERFAMILY	31	86
IPR035935	TFB5-like_sf	Gene3D	15	86
IPR035935	TFB5-like_sf	SUPERFAMILY	31	86
IPR009400	TFIIH_TTDA/Tfb5	PANTHER	1	87
IPR009400	TFIIH_TTDA/Tfb5	Pfam	23	85
IPR009400	TFIIH_TTDA/Tfb5	SMART	23	85

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d031102_T001

Expression Profile

Co-expression Networks

Functional Annotation