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  5. Zm00001d031217_T003

Zm00001d031217_T003


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0006784 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006784_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d031217_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d031217_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_185
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_143


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 429 463
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 499 533
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 568 602
IPR002625 Smr_dom SMART 750 842
IPR002625 Smr_dom ProSiteProfiles 753 834
IPR002885 Pentatricopeptide_rpt Pfam 571 600
IPR002885 Pentatricopeptide_rpt Pfam 362 389
IPR002885 Pentatricopeptide_rpt Pfam 460 491
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 359 393
IPR002885 Pentatricopeptide_rpt NCBIfam 396 429
IPR002885 Pentatricopeptide_rpt NCBIfam 536 564
IPR002885 Pentatricopeptide_rpt NCBIfam 361 395
IPR002885 Pentatricopeptide_rpt NCBIfam 431 465
IPR002885 Pentatricopeptide_rpt NCBIfam 606 639
IPR002885 Pentatricopeptide_rpt NCBIfam 571 604
IPR002885 Pentatricopeptide_rpt NCBIfam 466 499
IPR002885 Pentatricopeptide_rpt NCBIfam 501 534
IPR036063 Smr_dom_sf SUPERFAMILY 751 832
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 464 498
IPR002885 Pentatricopeptide_rpt Pfam 498 545
IPR002885 Pentatricopeptide_rpt Pfam 602 649
IPR002885 Pentatricopeptide_rpt Pfam 393 441
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 394 632
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 603 637
IPR011990 TPR-like_helical_dom_sf Gene3D 292 442
IPR011990 TPR-like_helical_dom_sf Gene3D 443 543
IPR011990 TPR-like_helical_dom_sf Gene3D 544 656
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 534 564
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 394 428
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 534 564
IPR002885 Pentatricopeptide_rpt Pfam 602 649
IPR002885 Pentatricopeptide_rpt Pfam 498 543
IPR002885 Pentatricopeptide_rpt Pfam 393 439
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 603 637
IPR002625 Smr_dom SMART 750 842
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 499 533
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 464 498
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 394 632
IPR036063 Smr_dom_sf SUPERFAMILY 751 832
IPR002885 Pentatricopeptide_rpt Pfam 460 491
IPR002885 Pentatricopeptide_rpt Pfam 571 600
IPR002885 Pentatricopeptide_rpt Pfam 362 389
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 359 393
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 429 463
IPR002885 Pentatricopeptide_rpt TIGRFAM 396 429
IPR002885 Pentatricopeptide_rpt TIGRFAM 571 604
IPR002885 Pentatricopeptide_rpt TIGRFAM 501 534
IPR002885 Pentatricopeptide_rpt TIGRFAM 606 639
IPR002885 Pentatricopeptide_rpt TIGRFAM 361 395
IPR002885 Pentatricopeptide_rpt TIGRFAM 536 564
IPR002885 Pentatricopeptide_rpt TIGRFAM 466 499
IPR002885 Pentatricopeptide_rpt TIGRFAM 431 465
IPR011990 TPR-like_helical_dom_sf Gene3D 292 442
IPR011990 TPR-like_helical_dom_sf Gene3D 443 543
IPR011990 TPR-like_helical_dom_sf Gene3D 544 656
IPR002625 Smr_dom ProSiteProfiles 753 834
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 394 428
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 568 602

No CAZYmes available for this sequence

No external refs found!