Zm00001d031323_T001

Description : COP9 signalosome subunit 6A

Gene families : OG_01_0004144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004144_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d031323_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d031323_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_315
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_227

Type	GO Term	Name	Evidence	Source
BP	GO:0000338	protein deneddylation	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0008180	COP9 signalosome	ISM	GOs from InterProScan
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0070122	obsolete isopeptidase activity	ISM	GOs from InterProScan
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140492	metal-dependent deubiquitinase activity	ISM	GOs from InterProScan
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR024969	EIF3F/CSN6-like_C	Pfam	198	311
IPR000555	JAMM/MPN+_dom	SMART	28	177
IPR033859	MPN_CSN6	CDD	27	325
IPR037518	MPN	ProSiteProfiles	29	178
IPR000555	JAMM/MPN+_dom	Pfam	26	149
IPR037518	MPN	ProSiteProfiles	29	178
IPR000555	JAMM/MPN+_dom	SMART	28	177
IPR000555	JAMM/MPN+_dom	Pfam	26	150
IPR033859	MPN_CSN6	CDD	27	325
IPR024969	EIF3F/CSN6-like_C	Pfam	198	311

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d031323_T001

Expression Profile

Co-expression Networks

Functional Annotation