Zm00001d031707_T001

Description : RNA-binding protein

Gene families : OG_01_0008434 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008434_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d031707_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d031707_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_103
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_208

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	ISM	GOs from InterProScan

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006630	La_HTH	ProSiteProfiles	102	193
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	105	190
IPR036388	WH-like_DNA-bd_sf	Gene3D	101	185
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	186	286
IPR006630	La_HTH	SMART	106	186
IPR045180	La_dom_prot	PANTHER	11	411
IPR002344	Lupus_La	PRINTS	115	132
IPR002344	Lupus_La	PRINTS	141	156
IPR002344	Lupus_La	PRINTS	172	185
IPR002344	Lupus_La	PRINTS	251	269
IPR006630	La_HTH	Pfam	112	169
IPR035979	RBD_domain_sf	SUPERFAMILY	192	274
IPR000504	RRM_dom	ProSiteProfiles	197	274
IPR002344	Lupus_La	PRINTS	115	132
IPR002344	Lupus_La	PRINTS	141	156
IPR002344	Lupus_La	PRINTS	172	185
IPR002344	Lupus_La	PRINTS	251	269
IPR036388	WH-like_DNA-bd_sf	Gene3D	101	185
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	105	190
IPR006630	La_HTH	SMART	106	186
IPR000504	RRM_dom	ProSiteProfiles	197	274
IPR006630	La_HTH	Pfam	112	169
IPR045180	La_dom_prot	PANTHER	1	417
IPR006630	La_HTH	ProSiteProfiles	102	193
IPR035979	RBD_domain_sf	SUPERFAMILY	192	274
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	186	286

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d031707_T001

Expression Profile

Co-expression Networks

Functional Annotation