1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d031993_T001

Zm00001d031993_T001


Description : Rhamnogalacturonate lyase family protein


Gene families : OG_01_0002264 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002264_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d031993_T001 No neighbors in network
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d031993_T001
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_121


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0030246 carbohydrate binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR029411 RG-lyase_III Pfam 443 632
IPR029413 RG-lyase_II Pfam 357 428
IPR011013 Gal_mutarotase_sf_dom SUPERFAMILY 21 298
IPR029413 RG-lyase_II CDD 334 433
IPR010325 Rhamnogal_lyase Pfam 15 203
IPR014718 GH-type_carb-bd Gene3D 12 310
IPR013784 Carb-bd-like_fold SUPERFAMILY 337 429
IPR008979 Galactose-bd-like_sf SUPERFAMILY 440 633
IPR010325 Rhamnogal_lyase Pfam 13 203
IPR013784 Carb-bd-like_fold SUPERFAMILY 337 429
IPR011013 Gal_mutarotase_sf_dom SUPERFAMILY 21 298
IPR008979 Galactose-bd-like_sf SUPERFAMILY 440 633
IPR014718 GH-type_carb-bd Gene3D 12 310
IPR029411 RG-lyase_III Pfam 443 632
IPR029413 RG-lyase_II CDD 334 433
IPR029413 RG-lyase_II Pfam 357 428

No CAZYmes available for this sequence

No external refs found!