Zm00001d032239_T001

Description : high mobility group A

Gene families : OG_01_0008657 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008657_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d032239_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d032239_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_17
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_206

Type	GO Term	Name	Evidence	Source
CC	GO:0000785	chromatin	ISM	GOs from InterProScan
CC	GO:0000786	nucleosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	ISM	GOs from InterProScan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071824	protein-DNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000116	HMGA	PRINTS	113	124
IPR000116	HMGA	PRINTS	85	97
IPR000116	HMGA	PRINTS	127	146
IPR036388	WH-like_DNA-bd_sf	Gene3D	7	88
IPR017956	AT_hook_DNA-bd_motif	Pfam	138	149
IPR017956	AT_hook_DNA-bd_motif	Pfam	113	124
IPR017956	AT_hook_DNA-bd_motif	Pfam	173	184
IPR017956	AT_hook_DNA-bd_motif	Pfam	87	98
IPR017956	AT_hook_DNA-bd_motif	PRINTS	171	181
IPR017956	AT_hook_DNA-bd_motif	PRINTS	87	97
IPR017956	AT_hook_DNA-bd_motif	PRINTS	136	147
IPR005818	Histone_H1/H5_H15	ProSiteProfiles	11	81
IPR005818	Histone_H1/H5_H15	Pfam	13	74
IPR017956	AT_hook_DNA-bd_motif	SMART	173	185
IPR017956	AT_hook_DNA-bd_motif	SMART	113	125
IPR017956	AT_hook_DNA-bd_motif	SMART	138	150
IPR017956	AT_hook_DNA-bd_motif	SMART	87	99
IPR005818	Histone_H1/H5_H15	SMART	9	75
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	8	87
IPR005818	Histone_H1/H5_H15	Pfam	13	74
IPR036388	WH-like_DNA-bd_sf	Gene3D	7	88
IPR017956	AT_hook_DNA-bd_motif	PRINTS	171	181
IPR017956	AT_hook_DNA-bd_motif	PRINTS	87	97
IPR017956	AT_hook_DNA-bd_motif	PRINTS	136	147
IPR000116	HMGA	PRINTS	113	124
IPR000116	HMGA	PRINTS	85	97
IPR000116	HMGA	PRINTS	127	146
IPR005818	Histone_H1/H5_H15	SMART	9	75
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	8	87
IPR005818	Histone_H1/H5_H15	ProSiteProfiles	11	81
IPR017956	AT_hook_DNA-bd_motif	SMART	173	185
IPR017956	AT_hook_DNA-bd_motif	SMART	113	125
IPR017956	AT_hook_DNA-bd_motif	SMART	138	150
IPR017956	AT_hook_DNA-bd_motif	SMART	87	99
IPR017956	AT_hook_DNA-bd_motif	Pfam	173	184
IPR017956	AT_hook_DNA-bd_motif	Pfam	113	124
IPR017956	AT_hook_DNA-bd_motif	Pfam	138	149
IPR017956	AT_hook_DNA-bd_motif	Pfam	87	98

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d032239_T001

Expression Profile

Co-expression Networks

Functional Annotation