Zm00001d032373_T004

Description : ortholog of maize chloroplast splicing factor CRS1

Gene families : OG_01_0007780 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007780_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d032373_T004
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d032373_T004
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_264
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_135

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003729	mRNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001890	RNA-binding_CRM	ProSiteProfiles	611	711
IPR035920	YhbY-like_sf	SUPERFAMILY	380	490
IPR045278	CRS1/CFM2/CFM3	PANTHER	17	760
IPR001890	RNA-binding_CRM	ProSiteProfiles	379	496
IPR035920	YhbY-like_sf	Gene3D	381	491
IPR035920	YhbY-like_sf	SUPERFAMILY	170	262
IPR001890	RNA-binding_CRM	SMART	381	485
IPR001890	RNA-binding_CRM	SMART	613	700
IPR001890	RNA-binding_CRM	SMART	170	254
IPR035920	YhbY-like_sf	SUPERFAMILY	612	710
IPR001890	RNA-binding_CRM	Pfam	381	449
IPR001890	RNA-binding_CRM	Pfam	170	254
IPR001890	RNA-binding_CRM	Pfam	613	700
IPR035920	YhbY-like_sf	Gene3D	612	715
IPR035920	YhbY-like_sf	Gene3D	168	268
IPR001890	RNA-binding_CRM	ProSiteProfiles	168	265
IPR035920	YhbY-like_sf	SUPERFAMILY	380	490
IPR035920	YhbY-like_sf	Gene3D	612	715
IPR035920	YhbY-like_sf	Gene3D	168	268
IPR001890	RNA-binding_CRM	ProSiteProfiles	168	265
IPR001890	RNA-binding_CRM	ProSiteProfiles	379	496
IPR045278	CRS1/CFM2/CFM3	PANTHER	16	758
IPR001890	RNA-binding_CRM	SMART	381	485
IPR001890	RNA-binding_CRM	SMART	613	700
IPR001890	RNA-binding_CRM	SMART	170	254
IPR035920	YhbY-like_sf	Gene3D	381	491
IPR035920	YhbY-like_sf	SUPERFAMILY	170	262
IPR001890	RNA-binding_CRM	ProSiteProfiles	611	711
IPR035920	YhbY-like_sf	SUPERFAMILY	612	710
IPR001890	RNA-binding_CRM	Pfam	170	254
IPR001890	RNA-binding_CRM	Pfam	382	485
IPR001890	RNA-binding_CRM	Pfam	613	700

No CAZYmes available for this sequence

External Links

No external refs found!