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Description : pentatricopeptide repeat 336
Gene families : OG_01_0012212 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012212_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d032661_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d032661_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_165 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_469 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 302 | 336 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 196 | 223 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 304 | 331 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 269 | 302 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 196 | 225 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 291 | 377 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 131 | 284 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 267 | 301 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 232 | 266 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 266 | 314 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 302 | 336 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 232 | 266 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 298 | 330 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 267 | 301 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 215 | 277 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 131 | 284 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 291 | 377 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 304 | 331 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 196 | 225 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 269 | 302 |
No CAZYmes available for this sequence
| No external refs found! |