1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d032806_T001

Zm00001d032806_T001


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0005765 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005765_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d032806_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d032806_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_21
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_199


Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002022 Pec_lyase Pfam 106 274
IPR018082 AmbAllergen PRINTS 68 93
IPR018082 AmbAllergen PRINTS 313 337
IPR018082 AmbAllergen PRINTS 169 190
IPR018082 AmbAllergen PRINTS 44 61
IPR018082 AmbAllergen PRINTS 249 268
IPR018082 AmbAllergen PRINTS 342 365
IPR018082 AmbAllergen PRINTS 271 290
IPR018082 AmbAllergen PRINTS 104 120
IPR002022 Pec_lyase SMART 96 294
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 46 363
IPR012334 Pectin_lyas_fold Gene3D 28 364
IPR045032 PEL PANTHER 35 364
IPR012334 Pectin_lyas_fold Gene3D 28 364
IPR002022 Pec_lyase Pfam 106 275
IPR045032 PEL PANTHER 35 382
IPR002022 Pec_lyase SMART 96 294
IPR018082 AmbAllergen PRINTS 68 93
IPR018082 AmbAllergen PRINTS 313 337
IPR018082 AmbAllergen PRINTS 169 190
IPR018082 AmbAllergen PRINTS 44 61
IPR018082 AmbAllergen PRINTS 249 268
IPR018082 AmbAllergen PRINTS 342 365
IPR018082 AmbAllergen PRINTS 271 290
IPR018082 AmbAllergen PRINTS 104 120
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 46 363

No CAZYmes available for this sequence

No external refs found!