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  5. Zm00001d032875_T004

Zm00001d032875_T004


Description : Splicing factor, CC1-like


Gene families : OG_01_0001278 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001278_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d032875_T004
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d032875_T004
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_255
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_221


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006397 mRNA processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom ProSiteProfiles 449 527
IPR000504 RRM_dom ProSiteProfiles 265 343
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 252 353
IPR035979 RBD_domain_sf SUPERFAMILY 163 259
IPR006509 RBM39_SF PANTHER 29 536
IPR000504 RRM_dom Pfam 174 237
IPR000504 RRM_dom Pfam 267 337
IPR000504 RRM_dom Pfam 468 520
IPR029123 RBM39_linker Pfam 357 462
IPR035979 RBD_domain_sf SUPERFAMILY 265 524
IPR000504 RRM_dom SMART 445 523
IPR000504 RRM_dom SMART 169 241
IPR000504 RRM_dom SMART 266 339
IPR000504 RRM_dom ProSiteProfiles 168 245
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 87 251
IPR006509 RBM39_SF NCBIfam 53 533
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 438 537
IPR029123 RBM39_linker Pfam 357 462
IPR000504 RRM_dom ProSiteProfiles 168 245
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 438 537
IPR035979 RBD_domain_sf SUPERFAMILY 163 259
IPR000504 RRM_dom SMART 445 523
IPR000504 RRM_dom SMART 169 241
IPR000504 RRM_dom SMART 266 339
IPR035979 RBD_domain_sf SUPERFAMILY 265 524
IPR000504 RRM_dom Pfam 267 337
IPR000504 RRM_dom Pfam 175 237
IPR000504 RRM_dom Pfam 468 520
IPR000504 RRM_dom ProSiteProfiles 265 343
IPR000504 RRM_dom ProSiteProfiles 449 527
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 252 353
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 87 251
IPR006509 RBM39_SF TIGRFAM 53 533

No CAZYmes available for this sequence

No external refs found!