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  5. Zm00001d033288_T001

Zm00001d033288_T001


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0018118 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018118_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d033288_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d033288_T001 No neighbors in network
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_152


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 202 230
IPR002885 Pentatricopeptide_rpt Pfam 306 332
IPR002885 Pentatricopeptide_rpt Pfam 409 433
IPR002885 Pentatricopeptide_rpt Pfam 174 196
IPR002885 Pentatricopeptide_rpt Pfam 234 262
IPR002885 Pentatricopeptide_rpt Pfam 101 128
IPR002885 Pentatricopeptide_rpt Pfam 338 381
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 231 265
IPR011990 TPR-like_helical_dom_sf Gene3D 57 159
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 335 369
IPR011990 TPR-like_helical_dom_sf Gene3D 160 284
IPR002885 Pentatricopeptide_rpt NCBIfam 102 134
IPR002885 Pentatricopeptide_rpt NCBIfam 234 267
IPR002885 Pentatricopeptide_rpt NCBIfam 306 333
IPR002885 Pentatricopeptide_rpt NCBIfam 338 370
IPR002885 Pentatricopeptide_rpt NCBIfam 202 230
IPR046848 E_motif Pfam 452 514
IPR045215 PPR_prot_At1g15510 PANTHER 42 227
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 370 405
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 138 484
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 200 230
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 99 133
IPR011990 TPR-like_helical_dom_sf Gene3D 400 521
IPR011990 TPR-like_helical_dom_sf Gene3D 285 399
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 335 369
IPR002885 Pentatricopeptide_rpt Pfam 306 332
IPR002885 Pentatricopeptide_rpt Pfam 234 262
IPR002885 Pentatricopeptide_rpt Pfam 409 433
IPR002885 Pentatricopeptide_rpt Pfam 101 128
IPR002885 Pentatricopeptide_rpt Pfam 174 196
IPR002885 Pentatricopeptide_rpt Pfam 202 230
IPR002885 Pentatricopeptide_rpt Pfam 338 379
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 138 484
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 200 230
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 99 133
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 370 405
IPR011990 TPR-like_helical_dom_sf Gene3D 400 521
IPR011990 TPR-like_helical_dom_sf Gene3D 285 399
IPR011990 TPR-like_helical_dom_sf Gene3D 160 284
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 231 265
IPR011990 TPR-like_helical_dom_sf Gene3D 57 159
IPR002885 Pentatricopeptide_rpt TIGRFAM 338 370
IPR002885 Pentatricopeptide_rpt TIGRFAM 102 134
IPR002885 Pentatricopeptide_rpt TIGRFAM 202 230
IPR002885 Pentatricopeptide_rpt TIGRFAM 306 333
IPR002885 Pentatricopeptide_rpt TIGRFAM 234 267

No CAZYmes available for this sequence

No external refs found!