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  5. Zm00001d033309_T003

Zm00001d033309_T003


Description : pleiotropic regulatory locus 1


Gene families : OG_01_0005632 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005632_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d033309_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d033309_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_255
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_162


Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 379 419
IPR001680 WD40_rpt Pfam 159 196
IPR001680 WD40_rpt Pfam 288 322
IPR001680 WD40_rpt Pfam 243 280
IPR001680 WD40_rpt Pfam 433 459
IPR001680 WD40_rpt Pfam 201 238
IPR001680 WD40_rpt Pfam 381 410
IPR001680 WD40_rpt ProSiteProfiles 164 205
IPR001680 WD40_rpt ProSiteProfiles 248 289
IPR001680 WD40_rpt ProSiteProfiles 206 247
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 154 460
IPR001680 WD40_rpt ProSiteProfiles 290 331
IPR045241 Prp46/PLRG1-like PANTHER 8 476
IPR001680 WD40_rpt SMART 371 410
IPR001680 WD40_rpt SMART 157 196
IPR001680 WD40_rpt SMART 422 460
IPR001680 WD40_rpt SMART 325 368
IPR001680 WD40_rpt SMART 241 280
IPR001680 WD40_rpt SMART 199 238
IPR001680 WD40_rpt SMART 283 322
IPR019775 WD40_repeat_CS ProSitePatterns 309 323
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 145 483
IPR020472 G-protein_beta_WD-40_rep PRINTS 183 197
IPR020472 G-protein_beta_WD-40_rep PRINTS 309 323
IPR020472 G-protein_beta_WD-40_rep PRINTS 267 281
IPR019775 WD40_repeat_CS ProSitePatterns 267 281
IPR019775 WD40_repeat_CS ProSitePatterns 267 281
IPR001680 WD40_rpt ProSiteProfiles 290 331
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 145 483
IPR001680 WD40_rpt ProSiteProfiles 206 247
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 154 460
IPR001680 WD40_rpt ProSiteProfiles 379 419
IPR019775 WD40_repeat_CS ProSitePatterns 309 323
IPR001680 WD40_rpt Pfam 203 238
IPR001680 WD40_rpt Pfam 434 460
IPR001680 WD40_rpt Pfam 243 280
IPR001680 WD40_rpt Pfam 287 322
IPR001680 WD40_rpt Pfam 159 196
IPR001680 WD40_rpt ProSiteProfiles 248 289
IPR001680 WD40_rpt ProSiteProfiles 164 205
IPR020472 G-protein_beta_WD-40_rep PRINTS 183 197
IPR020472 G-protein_beta_WD-40_rep PRINTS 309 323
IPR020472 G-protein_beta_WD-40_rep PRINTS 267 281
IPR045241 Prp46/PLRG1-like PANTHER 11 483
IPR001680 WD40_rpt SMART 371 410
IPR001680 WD40_rpt SMART 157 196
IPR001680 WD40_rpt SMART 422 460
IPR001680 WD40_rpt SMART 325 368
IPR001680 WD40_rpt SMART 241 280
IPR001680 WD40_rpt SMART 199 238
IPR001680 WD40_rpt SMART 283 322

No CAZYmes available for this sequence

No external refs found!