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  5. Zm00001d033448_T004

Zm00001d033448_T004


Description : poly(A) polymerase 1


Gene families : OG_01_0002605 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002605_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d033448_T004
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d033448_T004
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_157
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_170


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0004652 obsolete polynucleotide adenylyltransferase activity ISM GOs from InterProScan
MF GO:0016779 nucleotidyltransferase activity ISM GOs from InterProScan
BP GO:0031123 RNA 3'-end processing ISM GOs from InterProScan
BP GO:0043631 obsolete RNA polyadenylation ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR007010 PolA_pol_RNA-bd_dom Pfam 359 418
IPR007010 PolA_pol_RNA-bd_dom Pfam 424 490
IPR048840 PolA_pol_NTPase Pfam 12 206
IPR011068 NuclTrfase_I-like_C SUPERFAMILY 358 484
IPR043519 NT_sf SUPERFAMILY 12 205
IPR043519 NT_sf Gene3D 44 200
IPR007012 PolA_pol_cen_dom Pfam 211 355
IPR043519 NT_sf SUPERFAMILY 12 205
IPR002934 Polymerase_NTP_transf_dom Pfam 85 140
IPR007012 PolA_pol_cen_dom Pfam 12 356
IPR043519 NT_sf Gene3D 44 200
IPR007010 PolA_pol_RNA-bd_dom Pfam 425 490
IPR007010 PolA_pol_RNA-bd_dom Pfam 359 418
IPR011068 NuclTrfase_I-like_C SUPERFAMILY 358 484

No CAZYmes available for this sequence

No external refs found!