Zm00001d033480_T002

Description : Cobalamin-independent synthase family protein

Gene families : OG_01_0001190 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001190_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d033480_T002
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d033480_T002
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_42
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_125

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	None	Extended
BP	GO:0000097	sulfur amino acid biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003871	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006555	methionine metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008172	S-methyltransferase activity	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0008652	amino acid biosynthetic process	ISM	GOs from InterProScan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009066	aspartate family amino acid metabolic process	None	Extended
BP	GO:0009067	aspartate family amino acid biosynthetic process	None	Extended
BP	GO:0009086	methionine biosynthetic process	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0042085	5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR038071	UROD/MetE-like_sf	Gene3D	390	758
IPR006276	Cobalamin-indep_Met_synthase	PIRSF	1	765
IPR038071	UROD/MetE-like_sf	SUPERFAMILY	3	395
IPR013215	Cbl-indep_Met_Synth_N	Pfam	3	316
IPR002629	Met_Synth_C/arc	Pfam	432	755
IPR006276	Cobalamin-indep_Met_synthase	NCBIfam	6	760
IPR006276	Cobalamin-indep_Met_synthase	Hamap	1	760
IPR038071	UROD/MetE-like_sf	SUPERFAMILY	397	759
IPR002629	Met_Synth_C/arc	CDD	433	756
IPR038071	UROD/MetE-like_sf	Gene3D	5	525
IPR002629	Met_Synth_C/arc	Pfam	432	755
IPR013215	Cbl-indep_Met_Synth_N	Pfam	3	316
IPR006276	Cobalamin-indep_Met_synthase	TIGRFAM	6	760
IPR002629	Met_Synth_C/arc	CDD	433	756
IPR038071	UROD/MetE-like_sf	Gene3D	5	525
IPR006276	Cobalamin-indep_Met_synthase	Hamap	1	760
IPR038071	UROD/MetE-like_sf	SUPERFAMILY	397	759
IPR038071	UROD/MetE-like_sf	Gene3D	390	758
IPR038071	UROD/MetE-like_sf	SUPERFAMILY	3	395
IPR006276	Cobalamin-indep_Met_synthase	PIRSF	1	765

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d033480_T002

Expression Profile

Co-expression Networks

Functional Annotation