Zm00001d033541_T001

Description : tRNA/rRNA methyltransferase (SpoU) family protein

Gene families : OG_01_0012381 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012381_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d033541_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d033541_T001	No neighbors in network
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_38

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR029064	Ribosomal_eL30-like_sf	SUPERFAMILY	80	179
IPR001537	SpoU_MeTrfase	Pfam	202	351
IPR029064	Ribosomal_eL30-like_sf	Gene3D	79	179
IPR029026	tRNA_m1G_MTases_N	Gene3D	192	361
IPR029028	Alpha/beta_knot_MTases	SUPERFAMILY	200	351
IPR029064	Ribosomal_eL30-like_sf	SUPERFAMILY	80	179
IPR029064	Ribosomal_eL30-like_sf	Gene3D	79	179
IPR029028	Alpha/beta_knot_MTases	SUPERFAMILY	200	351
IPR029026	tRNA_m1G_MTases_N	Gene3D	192	361
IPR001537	SpoU_MeTrfase	Pfam	203	351

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d033541_T001

Expression Profile

Co-expression Networks

Functional Annotation