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  5. Zm00001d033994_T002

Zm00001d033994_T002


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0010651 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010651_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d033994_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d033994_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_148
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_135


Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR045160 ATG16 PANTHER 212 507
IPR001680 WD40_rpt SMART 383 421
IPR001680 WD40_rpt SMART 300 340
IPR001680 WD40_rpt SMART 470 507
IPR001680 WD40_rpt SMART 424 467
IPR001680 WD40_rpt SMART 258 297
IPR001680 WD40_rpt SMART 216 255
IPR001680 WD40_rpt SMART 343 380
IPR001680 WD40_rpt ProSiteProfiles 223 264
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 358 507
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 214 506
IPR001680 WD40_rpt ProSiteProfiles 363 389
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 75 357
IPR001680 WD40_rpt ProSiteProfiles 446 467
IPR001680 WD40_rpt Pfam 301 340
IPR001680 WD40_rpt Pfam 384 419
IPR001680 WD40_rpt Pfam 447 467
IPR001680 WD40_rpt Pfam 218 254
IPR001680 WD40_rpt Pfam 261 296
IPR001680 WD40_rpt Pfam 357 380
IPR001680 WD40_rpt ProSiteProfiles 307 349
IPR020472 G-protein_beta_WD-40_rep PRINTS 327 341
IPR020472 G-protein_beta_WD-40_rep PRINTS 367 381
IPR020472 G-protein_beta_WD-40_rep PRINTS 242 256
IPR013923 Autophagy-rel_prot_16_dom Pfam 43 170
IPR019775 WD40_repeat_CS ProSitePatterns 327 341
IPR045160 ATG16 PANTHER 5 507
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 214 506
IPR001680 WD40_rpt Pfam 384 415
IPR001680 WD40_rpt Pfam 363 380
IPR001680 WD40_rpt Pfam 447 467
IPR001680 WD40_rpt Pfam 301 340
IPR001680 WD40_rpt Pfam 218 254
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 358 507
IPR001680 WD40_rpt ProSiteProfiles 446 467
IPR013923 Autophagy-rel_prot_16_dom Pfam 44 170
IPR001680 WD40_rpt SMART 383 421
IPR001680 WD40_rpt SMART 424 467
IPR001680 WD40_rpt SMART 470 507
IPR001680 WD40_rpt SMART 300 340
IPR001680 WD40_rpt SMART 258 297
IPR001680 WD40_rpt SMART 216 255
IPR001680 WD40_rpt SMART 343 380
IPR019775 WD40_repeat_CS ProSitePatterns 327 341
IPR020472 G-protein_beta_WD-40_rep PRINTS 327 341
IPR020472 G-protein_beta_WD-40_rep PRINTS 367 381
IPR020472 G-protein_beta_WD-40_rep PRINTS 242 256
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 75 357
IPR001680 WD40_rpt ProSiteProfiles 363 389
IPR001680 WD40_rpt ProSiteProfiles 307 349
IPR001680 WD40_rpt ProSiteProfiles 223 264

No CAZYmes available for this sequence

No external refs found!