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  5. Zm00001d034251_T001

Zm00001d034251_T001


Description : flavodoxin family protein / radical SAM domain-containing protein


Gene families : OG_01_0005991 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005991_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d034251_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d034251_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_52


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
BP GO:0008033 tRNA processing ISM GOs from InterProScan
MF GO:0010181 FMN binding ISM GOs from InterProScan
MF GO:0051536 iron-sulfur cluster binding ISM GOs from InterProScan
MF GO:0051539 4 iron, 4 sulfur cluster binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR034556 tRNA_wybutosine-synthase PANTHER 18 636
IPR007197 rSAM Pfam 327 505
IPR034556 tRNA_wybutosine-synthase SFLD 265 575
IPR001094 Flavdoxin-like PRINTS 46 59
IPR001094 Flavdoxin-like PRINTS 158 177
IPR001094 Flavdoxin-like PRINTS 133 143
IPR029039 Flavoprotein-like_sf SUPERFAMILY 44 197
IPR008254 Flavodoxin/NO_synth ProSiteProfiles 45 194
IPR008254 Flavodoxin/NO_synth Pfam 47 189
IPR029039 Flavoprotein-like_sf Gene3D 27 206
IPR007197 rSAM ProSiteProfiles 313 556
IPR013917 tRNA_wybutosine-synth Pfam 508 571
IPR013785 Aldolase_TIM Gene3D 254 584
IPR029039 Flavoprotein-like_sf SUPERFAMILY 44 197
IPR007197 rSAM SFLD 265 575
IPR008254 Flavodoxin/NO_synth Pfam 47 189
IPR013785 Aldolase_TIM Gene3D 254 584
IPR034556 tRNA_wybutosine-synthase PANTHER 9 635
IPR029039 Flavoprotein-like_sf Gene3D 27 206
IPR007197 rSAM Pfam 325 505
IPR001094 Flavdoxin-like PRINTS 46 59
IPR001094 Flavdoxin-like PRINTS 158 177
IPR001094 Flavdoxin-like PRINTS 133 143
IPR034556 tRNA_wybutosine-synthase SFLD 265 575
IPR008254 Flavodoxin/NO_synth ProSiteProfiles 45 194
IPR013917 tRNA_wybutosine-synth Pfam 508 571
IPR007197 rSAM ProSiteProfiles 313 556

No CAZYmes available for this sequence

No external refs found!