1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d034721_T002

Zm00001d034721_T002


Description : DEAD box RNA helicase (RH3)


Gene families : OG_01_0004178 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004178_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d034721_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d034721_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_192
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_125


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0003724 RNA helicase activity ISM GOs from InterProScan
MF GO:0004386 helicase activity ISM GOs from InterProScan
MF GO:0005524 ATP binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom Pfam 113 283
IPR012562 GUCT Pfam 537 631
IPR001650 Helicase_C SMART 349 429
IPR001650 Helicase_C Pfam 321 429
IPR027417 P-loop_NTPase Gene3D 90 299
IPR001878 Znf_CCHC Pfam 741 757
IPR036875 Znf_CCHC_sf SUPERFAMILY 722 758
IPR014014 RNA_helicase_DEAD_Q_motif ProSiteProfiles 88 116
IPR027417 P-loop_NTPase Gene3D 317 508
IPR014001 Helicase_ATP-bd SMART 107 312
IPR014001 Helicase_ATP-bd ProSiteProfiles 119 295
IPR001650 Helicase_C ProSiteProfiles 324 469
IPR001878 Znf_CCHC SMART 741 757
IPR001878 Znf_CCHC ProSiteProfiles 742 757
IPR027417 P-loop_NTPase SUPERFAMILY 165 449
IPR027417 P-loop_NTPase SUPERFAMILY 165 449
IPR036875 Znf_CCHC_sf SUPERFAMILY 722 758
IPR001650 Helicase_C SMART 349 429
IPR027417 P-loop_NTPase Gene3D 90 299
IPR014001 Helicase_ATP-bd SMART 107 312
IPR001650 Helicase_C Pfam 323 429
IPR012562 GUCT Pfam 539 631
IPR001878 Znf_CCHC SMART 741 757
IPR011545 DEAD/DEAH_box_helicase_dom Pfam 112 284
IPR014001 Helicase_ATP-bd ProSiteProfiles 119 295
IPR001650 Helicase_C ProSiteProfiles 324 469
IPR001878 Znf_CCHC ProSiteProfiles 742 757
IPR027417 P-loop_NTPase Gene3D 317 508
IPR001878 Znf_CCHC Pfam 741 757
IPR014014 RNA_helicase_DEAD_Q_motif ProSiteProfiles 88 116

No CAZYmes available for this sequence

No external refs found!