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  5. Zm00001d034750_T004

Zm00001d034750_T004


Description : pumilio 24


Gene families : OG_01_0002246 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002246_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d034750_T004
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d034750_T004
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_90


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 183 219
IPR016024 ARM-type_fold SUPERFAMILY 371 474
IPR001313 Pumilio_RNA-bd_rpt SMART 184 219
IPR001313 Pumilio_RNA-bd_rpt SMART 148 183
IPR001313 Pumilio_RNA-bd_rpt SMART 220 255
IPR001313 Pumilio_RNA-bd_rpt SMART 404 440
IPR011989 ARM-like Gene3D 365 671
IPR040059 PUM3 PANTHER 5 685
IPR011989 ARM-like Gene3D 120 354
IPR033133 PUM-HD ProSiteProfiles 120 467
IPR016024 ARM-type_fold SUPERFAMILY 129 341
IPR012959 CPL_dom Pfam 526 624
IPR011989 ARM-like Gene3D 120 354
IPR016024 ARM-type_fold SUPERFAMILY 129 341
IPR033133 PUM-HD ProSiteProfiles 120 467
IPR040059 PUM3 PANTHER 116 687
IPR012959 CPL_dom Pfam 526 624
IPR016024 ARM-type_fold SUPERFAMILY 371 474
IPR011989 ARM-like Gene3D 365 671
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 183 219
IPR001313 Pumilio_RNA-bd_rpt SMART 184 219
IPR001313 Pumilio_RNA-bd_rpt SMART 148 183
IPR001313 Pumilio_RNA-bd_rpt SMART 220 255
IPR001313 Pumilio_RNA-bd_rpt SMART 404 440

No CAZYmes available for this sequence

No external refs found!