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Description : pentatricopeptide (PPR) repeat-containing protein
Gene families : OG_01_0006224 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006224_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d034892_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d034892_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_188 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_173 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 326 | 370 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 435 | 483 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 185 | 310 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 471 | 505 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 439 | 472 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 223 | 258 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 474 | 506 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 400 | 425 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 259 | 292 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 330 | 363 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 327 | 361 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 397 | 431 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 436 | 470 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 211 | 268 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 401 | 426 |
| IPR002625 | Smr_dom | SMART | 616 | 699 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 292 | 326 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 431 | 569 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 311 | 430 |
| IPR002625 | Smr_dom | ProSiteProfiles | 619 | 705 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 257 | 291 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 185 | 310 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 471 | 505 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 223 | 258 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 439 | 472 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 259 | 292 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 474 | 506 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 330 | 363 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 400 | 425 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 257 | 291 |
| IPR002625 | Smr_dom | SMART | 616 | 699 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 401 | 426 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 211 | 268 |
| IPR002625 | Smr_dom | ProSiteProfiles | 619 | 705 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 327 | 361 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 431 | 569 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 311 | 430 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 326 | 370 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 436 | 483 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 292 | 326 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 436 | 470 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 397 | 431 |
No CAZYmes available for this sequence
| No external refs found! |