Zm00001d035014_T001

Description : sequence-specific DNA binding transcription factors

Gene families : OG_01_0007958 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007958_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d035014_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d035014_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_203
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_211

Type	GO Term	Name	Evidence	Source
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0042254	ribosome biogenesis	ISM	GOs from InterProScan
BP	GO:0042255	ribosome assembly	None	Extended
BP	GO:0042256	cytosolic ribosome assembly	ISM	GOs from InterProScan
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0070925	organelle assembly	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0140694	non-membrane-bounded organelle assembly	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR039100	Sdo1/SBDS-like	PANTHER	1	210
IPR037188	Sdo1/SBDS_central_sf	SUPERFAMILY	97	171
IPR036786	Ribosome_mat_SBDS_N_sf	SUPERFAMILY	13	96
IPR018023	Ribosome_mat_SBDS_CS	ProSitePatterns	46	65
IPR037188	Sdo1/SBDS_central_sf	Gene3D	100	172
IPR018978	SDO1/SBDS_central	Pfam	111	172
IPR036786	Ribosome_mat_SBDS_N_sf	Gene3D	1	96
IPR019783	SDO1/SBDS_N	Pfam	16	102
IPR002140	Sdo1/SBDS	NCBIfam	13	193
IPR018023	Ribosome_mat_SBDS_CS	ProSitePatterns	46	65
IPR002140	Sdo1/SBDS	TIGRFAM	13	193
IPR037188	Sdo1/SBDS_central_sf	SUPERFAMILY	97	171
IPR019783	SDO1/SBDS_N	Pfam	16	102
IPR036786	Ribosome_mat_SBDS_N_sf	SUPERFAMILY	13	96
IPR018978	SDO1/SBDS_central	Pfam	110	208
IPR036786	Ribosome_mat_SBDS_N_sf	Gene3D	1	96
IPR037188	Sdo1/SBDS_central_sf	Gene3D	100	172
IPR039100	Sdo1/SBDS-like	PANTHER	1	342

No CAZYmes available for this sequence

External Links

No external refs found!