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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0007405 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007405_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d035048_T009 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d035048_T009 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_255 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_215 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 277 | 418 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 419 | 637 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 115 | 276 |
| IPR046848 | E_motif | Pfam | 564 | 622 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 182 | 216 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 346 | 390 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 112 | 146 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 346 | 380 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 450 | 482 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 184 | 214 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 421 | 446 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 215 | 239 |
| IPR045215 | PPR_prot_At1g15510 | PANTHER | 364 | 627 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 215 | 238 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 116 | 144 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 185 | 212 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 421 | 444 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 450 | 479 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 246 | 275 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 521 | 545 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 447 | 481 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 215 | 239 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 450 | 482 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 184 | 214 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 421 | 446 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 447 | 481 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 215 | 238 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 521 | 545 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 421 | 444 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 450 | 479 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 116 | 144 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 185 | 212 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 246 | 275 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 346 | 390 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 182 | 216 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 346 | 380 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 112 | 146 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 277 | 418 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 419 | 637 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 115 | 276 |
No CAZYmes available for this sequence
| No external refs found! |