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  5. Zm00001d035509_T001

Zm00001d035509_T001


Description : ubiquitin-protein ligase 4


Gene families : OG_01_0009174 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009174_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d035509_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d035509_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_600
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_286


Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity ISM GOs from InterProScan
BP GO:0006511 ubiquitin-dependent protein catabolic process ISM GOs from InterProScan
MF GO:0061630 ubiquitin protein ligase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR016024 ARM-type_fold SUPERFAMILY 28 454
IPR000569 HECT_dom CDD 956 1334
IPR000569 HECT_dom Pfam 1002 1336
IPR000569 HECT_dom SMART 972 1336
IPR035983 Hect_E3_ubiquitin_ligase SUPERFAMILY 946 1329
IPR000569 HECT_dom ProSiteProfiles 972 1336
IPR045322 HECTD1/TRIP12-like PANTHER 728 1336
IPR011989 ARM-like Gene3D 21 454
IPR000569 HECT_dom CDD 956 1334
IPR000569 HECT_dom ProSiteProfiles 972 1336
IPR016024 ARM-type_fold SUPERFAMILY 28 454
IPR045322 HECTD1/TRIP12-like PANTHER 3 1336
IPR035983 Hect_E3_ubiquitin_ligase SUPERFAMILY 946 1329
IPR000569 HECT_dom Pfam 1001 1336
IPR000569 HECT_dom SMART 972 1336
IPR011989 ARM-like Gene3D 21 454

No CAZYmes available for this sequence

No external refs found!