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  5. Zm00001d035679_T006

Zm00001d035679_T006


Description : pumilio 1


Gene families : OG_01_0007041 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007041_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d035679_T006
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d035679_T006
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_170


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012940 NABP Pfam 317 534
IPR012940 NABP Pfam 216 315
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 535 570
IPR033712 Pumilio_RNA-bd CDD 530 925
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 862 903
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 679 715
IPR011989 ARM-like Gene3D 513 744
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 826 861
IPR033133 PUM-HD ProSiteProfiles 515 929
IPR001313 Pumilio_RNA-bd_rpt SMART 607 642
IPR001313 Pumilio_RNA-bd_rpt SMART 679 715
IPR001313 Pumilio_RNA-bd_rpt SMART 535 570
IPR001313 Pumilio_RNA-bd_rpt SMART 826 861
IPR001313 Pumilio_RNA-bd_rpt SMART 643 678
IPR001313 Pumilio_RNA-bd_rpt SMART 571 606
IPR001313 Pumilio_RNA-bd_rpt SMART 716 751
IPR001313 Pumilio_RNA-bd_rpt SMART 868 903
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 571 606
IPR001313 Pumilio_RNA-bd_rpt Pfam 653 677
IPR001313 Pumilio_RNA-bd_rpt Pfam 539 573
IPR001313 Pumilio_RNA-bd_rpt Pfam 876 905
IPR001313 Pumilio_RNA-bd_rpt Pfam 830 863
IPR001313 Pumilio_RNA-bd_rpt Pfam 612 644
IPR001313 Pumilio_RNA-bd_rpt Pfam 810 828
IPR001313 Pumilio_RNA-bd_rpt Pfam 683 718
IPR001313 Pumilio_RNA-bd_rpt Pfam 576 605
IPR001313 Pumilio_RNA-bd_rpt Pfam 721 735
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 607 642
IPR011989 ARM-like Gene3D 745 934
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 643 678
IPR016024 ARM-type_fold SUPERFAMILY 517 736
IPR016024 ARM-type_fold SUPERFAMILY 810 926
IPR016024 ARM-type_fold SUPERFAMILY 810 926
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 607 642
IPR033712 Pumilio_RNA-bd CDD 530 925
IPR033133 PUM-HD ProSiteProfiles 515 929
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 571 606
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 643 678
IPR001313 Pumilio_RNA-bd_rpt Pfam 653 677
IPR001313 Pumilio_RNA-bd_rpt Pfam 830 863
IPR001313 Pumilio_RNA-bd_rpt Pfam 683 718
IPR001313 Pumilio_RNA-bd_rpt Pfam 810 828
IPR001313 Pumilio_RNA-bd_rpt Pfam 876 903
IPR001313 Pumilio_RNA-bd_rpt Pfam 539 573
IPR001313 Pumilio_RNA-bd_rpt Pfam 576 605
IPR001313 Pumilio_RNA-bd_rpt Pfam 721 735
IPR001313 Pumilio_RNA-bd_rpt Pfam 611 644
IPR011989 ARM-like Gene3D 513 744
IPR011989 ARM-like Gene3D 745 934
IPR012940 NABP Pfam 216 338
IPR012940 NABP Pfam 317 534
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 679 715
IPR001313 Pumilio_RNA-bd_rpt SMART 607 642
IPR001313 Pumilio_RNA-bd_rpt SMART 679 715
IPR001313 Pumilio_RNA-bd_rpt SMART 535 570
IPR001313 Pumilio_RNA-bd_rpt SMART 826 861
IPR001313 Pumilio_RNA-bd_rpt SMART 643 678
IPR001313 Pumilio_RNA-bd_rpt SMART 571 606
IPR001313 Pumilio_RNA-bd_rpt SMART 716 751
IPR001313 Pumilio_RNA-bd_rpt SMART 868 903
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 535 570
IPR016024 ARM-type_fold SUPERFAMILY 517 736
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 862 903
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 826 861

No CAZYmes available for this sequence

No external refs found!