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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0014390 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014390_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.2G113700.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.2G113700.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_2 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_18 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 230 | 264 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 265 | 299 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 467 | 501 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 365 | 412 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 229 | 272 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 485 | 649 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 502 | 537 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 128 | 199 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 201 | 320 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 440 | 466 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 469 | 499 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 133 | 158 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 340 | 363 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 508 | 530 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 204 | 228 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 541 | 564 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 366 | 400 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 132 | 162 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 508 | 537 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 469 | 503 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 368 | 401 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 267 | 296 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 232 | 265 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 321 | 435 |
No CAZYmes available for this sequence
| No external refs found! |