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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0011407 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011407_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d036454_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d036454_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_96 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_240 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 194 | 305 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 45 | 79 |
| IPR006476 | CHP01589_pln | NCBIfam | 658 | 711 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 247 | 276 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 421 | 447 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 452 | 485 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 449 | 496 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 245 | 279 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 360 | 624 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 46 | 193 |
| IPR006476 | CHP01589_pln | Pfam | 659 | 710 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 450 | 484 |
| IPR045215 | PPR_prot_At1g15510 | PANTHER | 294 | 617 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 45 | 91 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 449 | 496 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 194 | 305 |
| IPR006476 | CHP01589_pln | PANTHER | 659 | 937 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 421 | 447 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 247 | 276 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 45 | 79 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 452 | 485 |
| IPR006476 | CHP01589_pln | TIGRFAM | 658 | 711 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 450 | 484 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 46 | 193 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 360 | 624 |
| IPR006476 | CHP01589_pln | Pfam | 659 | 710 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 245 | 279 |
No CAZYmes available for this sequence
| No external refs found! |