Zm00001d036563_T001

Description : SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein

Gene families : OG_01_0015327 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015327_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d036563_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d036563_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_195

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006873	intracellular monoatomic ion homeostasis	None	Extended
BP	GO:0006874	intracellular calcium ion homeostasis	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
BP	GO:0030003	intracellular monoatomic cation homeostasis	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050801	monoatomic ion homeostasis	None	Extended
BP	GO:0055074	calcium ion homeostasis	None	Extended
BP	GO:0055080	monoatomic cation homeostasis	None	Extended
BP	GO:0055082	intracellular chemical homeostasis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098771	inorganic ion homeostasis	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006569	CID_dom	Pfam	246	370
IPR035967	SWAP/Surp_sf	SUPERFAMILY	94	170
IPR035967	SWAP/Surp_sf	Gene3D	110	173
IPR006569	CID_dom	SMART	245	376
IPR000061	Surp	ProSiteProfiles	123	167
IPR008942	ENTH_VHS	Gene3D	243	378
IPR006569	CID_dom	ProSiteProfiles	238	379
IPR000061	Surp	Pfam	123	169
IPR039037	CHERP	PANTHER	110	638
IPR000061	Surp	SMART	121	173
IPR006569	CID_dom	ProSiteProfiles	238	379
IPR039037	CHERP	PANTHER	113	637
IPR006569	CID_dom	SMART	245	376
IPR035967	SWAP/Surp_sf	Gene3D	110	173
IPR000061	Surp	SMART	121	173
IPR035967	SWAP/Surp_sf	SUPERFAMILY	94	170
IPR000061	Surp	Pfam	124	169
IPR000061	Surp	ProSiteProfiles	123	167
IPR008942	ENTH_VHS	Gene3D	243	378
IPR006569	CID_dom	Pfam	246	370

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d036563_T001

Expression Profile

Co-expression Networks

Functional Annotation