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  5. Zm00001d036796_T004

Zm00001d036796_T004


Description : KH domain-containing protein / zinc finger (CCCH type) family protein


Gene families : OG_01_0000640 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000640_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d036796_T004
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d036796_T004
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_206
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_213


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0003729 mRNA binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036855 Znf_CCCH_sf SUPERFAMILY 97 128
IPR000571 Znf_CCCH ProSiteProfiles 266 293
IPR036612 KH_dom_type_1_sf SUPERFAMILY 166 239
IPR000571 Znf_CCCH Pfam 33 57
IPR000571 Znf_CCCH Pfam 267 292
IPR000571 Znf_CCCH SMART 31 58
IPR000571 Znf_CCCH SMART 97 124
IPR000571 Znf_CCCH SMART 266 292
IPR004087 KH_dom SMART 168 238
IPR045877 ZFP36-like PANTHER 98 292
IPR036612 KH_dom_type_1_sf Gene3D 166 264
IPR004088 KH_dom_type_1 Pfam 171 234
IPR036855 Znf_CCCH_sf SUPERFAMILY 32 59
IPR000571 Znf_CCCH ProSiteProfiles 97 125
IPR000571 Znf_CCCH ProSiteProfiles 31 59
IPR036855 Znf_CCCH_sf SUPERFAMILY 266 297
IPR000571 Znf_CCCH ProSiteProfiles 97 125
IPR036855 Znf_CCCH_sf SUPERFAMILY 266 297
IPR000571 Znf_CCCH Pfam 267 292
IPR004087 KH_dom SMART 168 238
IPR000571 Znf_CCCH SMART 31 58
IPR000571 Znf_CCCH SMART 97 124
IPR000571 Znf_CCCH SMART 266 292
IPR000571 Znf_CCCH ProSiteProfiles 266 293
IPR036855 Znf_CCCH_sf SUPERFAMILY 97 128
IPR036612 KH_dom_type_1_sf SUPERFAMILY 166 239
IPR036612 KH_dom_type_1_sf Gene3D 166 264
IPR045877 ZFP36-like PANTHER 3 299
IPR000571 Znf_CCCH ProSiteProfiles 31 59
IPR036855 Znf_CCCH_sf SUPERFAMILY 32 59
IPR004088 KH_dom_type_1 Pfam 171 234

No CAZYmes available for this sequence

No external refs found!