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  5. Zm00001d036823_T001

Zm00001d036823_T001


Description : glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein


Gene families : OG_01_0018277 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018277_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d036823_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d036823_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_321
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_156


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 39 409
IPR012334 Pectin_lyas_fold Gene3D 26 408
IPR006626 PbH1 SMART 219 240
IPR006626 PbH1 SMART 192 218
IPR006626 PbH1 SMART 242 262
IPR006626 PbH1 SMART 272 293
IPR006626 PbH1 SMART 337 377
IPR000743 Glyco_hydro_28 ProSitePatterns 249 262
IPR000743 Glyco_hydro_28 Pfam 68 399
IPR012334 Pectin_lyas_fold Gene3D 26 408
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 39 409
IPR000743 Glyco_hydro_28 Pfam 68 399
IPR006626 PbH1 SMART 219 240
IPR006626 PbH1 SMART 192 218
IPR006626 PbH1 SMART 242 262
IPR006626 PbH1 SMART 272 293
IPR006626 PbH1 SMART 337 377
IPR000743 Glyco_hydro_28 ProSitePatterns 249 262
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 411 1e-90 65 399
No external refs found!