Zm00001d037142_T001

Description : global transcription factor group A2

Gene families : OG_01_0005285 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005285_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d037142_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d037142_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_185

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISM	GOs from InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006357	regulation of transcription by RNA polymerase II	ISM	GOs from InterProScan
BP	GO:0006412	translation	ISM	GOs from InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032784	regulation of DNA-templated transcription elongation	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR014722	Rib_uL2_dom2	Gene3D	422	479
IPR014722	Rib_uL2_dom2	Gene3D	481	531
IPR014722	Rib_uL2_dom2	Gene3D	276	331
IPR041973	KOW_Spt5_1	CDD	280	317
IPR005100	NGN-domain	Pfam	187	268
IPR036735	NGN_dom_sf	Gene3D	167	269
IPR041978	KOW_Spt5_5	CDD	713	761
IPR039659	SPT5	PANTHER	70	1033
IPR005824	KOW	SMART	713	740
IPR005824	KOW	SMART	276	303
IPR005824	KOW	SMART	603	630
IPR005824	KOW	SMART	988	1015
IPR005824	KOW	SMART	479	506
IPR005824	KOW	SMART	427	454
IPR017071	TF_Spt5_eukaryote	PIRSF	53	1040
IPR017071	TF_Spt5_eukaryote	PIRSF	1	81
IPR014722	Rib_uL2_dom2	Gene3D	699	763
IPR041980	KOW_Spt5_6	CDD	982	1039
IPR006645	NGN-like_dom	SMART	185	271
IPR041976	KOW_Spt5_3	CDD	479	529
IPR022581	Spt5_N	Pfam	94	181
IPR039385	NGN_Euk	CDD	187	269
IPR041977	KOW_Spt5_4	CDD	607	649
IPR008991	Translation_prot_SH3-like_sf	SUPERFAMILY	471	530
IPR041975	KOW_Spt5_2	CDD	428	478
IPR005825	Ribosomal_uL24_CS	ProSitePatterns	431	448
IPR006645	NGN-like_dom	SMART	185	271
IPR041973	KOW_Spt5_1	CDD	280	317
IPR005825	Ribosomal_uL24_CS	ProSitePatterns	431	448
IPR039659	SPT5	PANTHER	22	1040
IPR022581	Spt5_N	Pfam	94	181
IPR041975	KOW_Spt5_2	CDD	428	478
IPR014722	Rib_uL2_dom2	Gene3D	699	763
IPR005100	NGN-domain	Pfam	187	268
IPR005824	KOW	Pfam	482	509
IPR014722	Rib_uL2_dom2	Gene3D	481	531
IPR041977	KOW_Spt5_4	CDD	607	649
IPR017071	TF_Spt5_eukaryote	PIRSF	53	1040
IPR017071	TF_Spt5_eukaryote	PIRSF	1	81
IPR039385	NGN_Euk	CDD	187	269
IPR014722	Rib_uL2_dom2	Gene3D	276	331
IPR041978	KOW_Spt5_5	CDD	713	761
IPR008991	Translation_prot_SH3-like_sf	SUPERFAMILY	471	530
IPR014722	Rib_uL2_dom2	Gene3D	422	479
IPR041980	KOW_Spt5_6	CDD	982	1039
IPR036735	NGN_dom_sf	Gene3D	167	269
IPR041976	KOW_Spt5_3	CDD	479	529
IPR005824	KOW	SMART	713	740
IPR005824	KOW	SMART	276	303
IPR005824	KOW	SMART	603	630
IPR005824	KOW	SMART	988	1015
IPR005824	KOW	SMART	479	506
IPR005824	KOW	SMART	427	454

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d037142_T001

Expression Profile

Co-expression Networks

Functional Annotation