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  5. Zm00001d037254_T001

Zm00001d037254_T001


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0012490 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012490_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d037254_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d037254_T001 No neighbors in network
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_145


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 516 550
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 314 348
IPR045215 PPR_prot_At1g15510 PANTHER 449 713
IPR011990 TPR-like_helical_dom_sf Gene3D 18 164
IPR011990 TPR-like_helical_dom_sf Gene3D 367 465
IPR011990 TPR-like_helical_dom_sf Gene3D 166 264
IPR011990 TPR-like_helical_dom_sf Gene3D 277 366
IPR002885 Pentatricopeptide_rpt NCBIfam 518 551
IPR002885 Pentatricopeptide_rpt NCBIfam 114 147
IPR002885 Pentatricopeptide_rpt NCBIfam 417 445
IPR002885 Pentatricopeptide_rpt NCBIfam 215 248
IPR002885 Pentatricopeptide_rpt NCBIfam 488 518
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 551 586
IPR002885 Pentatricopeptide_rpt Pfam 516 562
IPR002885 Pentatricopeptide_rpt Pfam 415 463
IPR011990 TPR-like_helical_dom_sf Gene3D 466 581
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 112 146
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 415 449
IPR032867 DYW_dom Pfam 731 823
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 213 247
IPR046848 E_motif Pfam 633 695
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 485 515
IPR002885 Pentatricopeptide_rpt Pfam 114 143
IPR002885 Pentatricopeptide_rpt Pfam 289 310
IPR002885 Pentatricopeptide_rpt Pfam 86 112
IPR002885 Pentatricopeptide_rpt Pfam 389 413
IPR002885 Pentatricopeptide_rpt Pfam 215 244
IPR002885 Pentatricopeptide_rpt Pfam 317 343
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 112 146
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 213 247
IPR002885 Pentatricopeptide_rpt TIGRFAM 215 248
IPR002885 Pentatricopeptide_rpt TIGRFAM 114 147
IPR002885 Pentatricopeptide_rpt TIGRFAM 518 551
IPR002885 Pentatricopeptide_rpt TIGRFAM 488 518
IPR002885 Pentatricopeptide_rpt TIGRFAM 417 445
IPR002885 Pentatricopeptide_rpt Pfam 86 112
IPR002885 Pentatricopeptide_rpt Pfam 389 413
IPR002885 Pentatricopeptide_rpt Pfam 317 343
IPR002885 Pentatricopeptide_rpt Pfam 114 143
IPR002885 Pentatricopeptide_rpt Pfam 289 310
IPR002885 Pentatricopeptide_rpt Pfam 215 244
IPR032867 DYW_dom Pfam 690 813
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 314 348
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 415 449
IPR002885 Pentatricopeptide_rpt Pfam 516 562
IPR002885 Pentatricopeptide_rpt Pfam 415 463
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 485 515
IPR011990 TPR-like_helical_dom_sf Gene3D 466 581
IPR011990 TPR-like_helical_dom_sf Gene3D 18 164
IPR011990 TPR-like_helical_dom_sf Gene3D 367 465
IPR011990 TPR-like_helical_dom_sf Gene3D 166 264
IPR011990 TPR-like_helical_dom_sf Gene3D 277 366
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 551 586
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 516 550

No CAZYmes available for this sequence

No external refs found!