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  5. Zm00001d037326_T001

Zm00001d037326_T001


Description : Rad23 UV excision repair protein family


Gene families : OG_01_0012756 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012756_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d037326_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d037326_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_217
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_43


Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006289 nucleotide-excision repair ISM GOs from InterProScan
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000626 Ubiquitin-like_dom ProSiteProfiles 1 79
IPR009060 UBA-like_sf SUPERFAMILY 152 204
IPR029071 Ubiquitin-like_domsf SUPERFAMILY 1 89
IPR015940 UBA ProSiteProfiles 155 198
IPR015940 UBA ProSiteProfiles 352 393
IPR000626 Ubiquitin-like_dom Pfam 3 76
IPR015940 UBA Pfam 158 195
IPR015940 UBA Pfam 355 390
IPR015940 UBA SMART 355 392
IPR015940 UBA SMART 157 197
IPR006636 STI1_HS-bd SMART 271 314
IPR036353 XPC-bd_sf SUPERFAMILY 269 334
IPR009060 UBA-like_sf SUPERFAMILY 337 397
IPR000626 Ubiquitin-like_dom SMART 1 75
IPR004806 Rad23 NCBIfam 1 398
IPR015360 XPC-bd Pfam 273 327
IPR036353 XPC-bd_sf Gene3D 265 329
IPR004806 Rad23 PRINTS 299 321
IPR004806 Rad23 PRINTS 349 365
IPR004806 Rad23 PRINTS 366 380
IPR004806 Rad23 PRINTS 381 396
IPR015940 UBA ProSiteProfiles 352 393
IPR036353 XPC-bd_sf SUPERFAMILY 269 334
IPR015940 UBA ProSiteProfiles 155 198
IPR015940 UBA SMART 355 392
IPR015940 UBA SMART 157 197
IPR000626 Ubiquitin-like_dom SMART 1 75
IPR009060 UBA-like_sf SUPERFAMILY 152 204
IPR009060 UBA-like_sf SUPERFAMILY 337 397
IPR000626 Ubiquitin-like_dom Pfam 3 76
IPR029071 Ubiquitin-like_domsf SUPERFAMILY 1 89
IPR004806 Rad23 PRINTS 299 321
IPR004806 Rad23 PRINTS 349 365
IPR004806 Rad23 PRINTS 366 380
IPR004806 Rad23 PRINTS 381 396
IPR015360 XPC-bd Pfam 273 327
IPR036353 XPC-bd_sf Gene3D 265 329
IPR004806 Rad23 TIGRFAM 1 398
IPR015940 UBA Pfam 157 195
IPR015940 UBA Pfam 355 390
IPR000626 Ubiquitin-like_dom ProSiteProfiles 1 79
IPR006636 STI1_HS-bd SMART 271 314

No CAZYmes available for this sequence

No external refs found!