1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d037815_T002

Zm00001d037815_T002


Description : RAD3-like DNA-binding helicase protein


Gene families : OG_01_0003624 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003624_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d037815_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d037815_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_114
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_215


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0003678 DNA helicase activity ISM GOs from InterProScan
MF GO:0004386 helicase activity ISM GOs from InterProScan
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0006139 nucleobase-containing compound metabolic process ISM GOs from InterProScan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR027417 P-loop_NTPase Gene3D 16 79
IPR006555 ATP-dep_Helicase_C SMART 677 861
IPR045028 DinG/Rad3-like PANTHER 13 905
IPR027417 P-loop_NTPase SUPERFAMILY 2 412
IPR002464 DNA/RNA_helicase_DEAH_CS ProSitePatterns 389 398
IPR014001 Helicase_ATP-bd SMART 14 444
IPR010614 RAD3-like_helicase_DEAD Pfam 185 416
IPR013020 Rad3/Chl1-like NCBIfam 310 892
IPR027417 P-loop_NTPase Gene3D 637 871
IPR014013 Helic_SF1/SF2_ATP-bd_DinG/Rad3 ProSiteProfiles 8 445
IPR006555 ATP-dep_Helicase_C Pfam 659 869
IPR027417 P-loop_NTPase Gene3D 155 434
IPR006554 Helicase-like_DEXD_c2 SMART 10 438
IPR002464 DNA/RNA_helicase_DEAH_CS ProSitePatterns 389 398
IPR027417 P-loop_NTPase Gene3D 155 434
IPR013020 Rad3/Chl1-like TIGRFAM 310 892
IPR027417 P-loop_NTPase Gene3D 637 871
IPR027417 P-loop_NTPase Gene3D 16 79
IPR027417 P-loop_NTPase SUPERFAMILY 2 412
IPR010614 RAD3-like_helicase_DEAD Pfam 185 416
IPR006555 ATP-dep_Helicase_C SMART 677 861
IPR014001 Helicase_ATP-bd SMART 14 444
IPR006554 Helicase-like_DEXD_c2 SMART 10 438
IPR014013 Helic_SF1/SF2_ATP-bd_DinG/Rad3 ProSiteProfiles 8 445
IPR006555 ATP-dep_Helicase_C Pfam 659 869
IPR045028 DinG/Rad3-like PANTHER 9 892

No CAZYmes available for this sequence

No external refs found!