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  5. Zm00001d037871_T002

Zm00001d037871_T002


Description : RNA-binding protein-defense related 1


Gene families : OG_01_0002964 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002964_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d037871_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d037871_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_273


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
CC GO:1990904 ribonucleoprotein complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom ProSiteProfiles 36 117
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 333 447
IPR000504 RRM_dom ProSiteProfiles 124 205
IPR000504 RRM_dom ProSiteProfiles 370 448
IPR000504 RRM_dom Pfam 126 194
IPR000504 RRM_dom Pfam 372 442
IPR000504 RRM_dom Pfam 38 101
IPR035979 RBD_domain_sf SUPERFAMILY 22 119
IPR002343 Hud_Sxl_RNA PRINTS 129 144
IPR002343 Hud_Sxl_RNA PRINTS 144 156
IPR002343 Hud_Sxl_RNA PRINTS 186 203
IPR002343 Hud_Sxl_RNA PRINTS 36 51
IPR000504 RRM_dom SMART 125 201
IPR000504 RRM_dom SMART 371 444
IPR000504 RRM_dom SMART 37 113
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 120 215
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 22 119
IPR035979 RBD_domain_sf SUPERFAMILY 124 450
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 333 447
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 120 215
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 22 119
IPR002343 Hud_Sxl_RNA PRINTS 129 144
IPR002343 Hud_Sxl_RNA PRINTS 144 156
IPR002343 Hud_Sxl_RNA PRINTS 186 203
IPR002343 Hud_Sxl_RNA PRINTS 36 51
IPR000504 RRM_dom SMART 125 201
IPR000504 RRM_dom SMART 371 444
IPR000504 RRM_dom SMART 37 113
IPR000504 RRM_dom ProSiteProfiles 124 205
IPR035979 RBD_domain_sf SUPERFAMILY 22 119
IPR000504 RRM_dom ProSiteProfiles 370 448
IPR000504 RRM_dom ProSiteProfiles 36 117
IPR035979 RBD_domain_sf SUPERFAMILY 124 450
IPR000504 RRM_dom Pfam 126 194
IPR000504 RRM_dom Pfam 38 102
IPR000504 RRM_dom Pfam 372 442

No CAZYmes available for this sequence

No external refs found!