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  5. Zm00001d037975_T029

Zm00001d037975_T029


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0010848 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010848_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d037975_T029
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d037975_T029
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_148
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_27


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt NCBIfam 473 505
IPR002885 Pentatricopeptide_rpt NCBIfam 367 401
IPR002885 Pentatricopeptide_rpt NCBIfam 403 436
IPR002885 Pentatricopeptide_rpt NCBIfam 438 471
IPR002885 Pentatricopeptide_rpt NCBIfam 333 366
IPR002885 Pentatricopeptide_rpt NCBIfam 544 574
IPR002885 Pentatricopeptide_rpt NCBIfam 507 542
IPR002885 Pentatricopeptide_rpt NCBIfam 299 324
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 400 434
IPR002885 Pentatricopeptide_rpt Pfam 435 481
IPR002885 Pentatricopeptide_rpt Pfam 364 413
IPR011990 TPR-like_helical_dom_sf Gene3D 465 630
IPR002885 Pentatricopeptide_rpt Pfam 267 293
IPR002885 Pentatricopeptide_rpt Pfam 229 258
IPR002885 Pentatricopeptide_rpt Pfam 333 361
IPR002885 Pentatricopeptide_rpt Pfam 544 572
IPR002885 Pentatricopeptide_rpt Pfam 299 324
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 365 399
IPR011990 TPR-like_helical_dom_sf Gene3D 167 324
IPR011990 TPR-like_helical_dom_sf Gene3D 325 392
IPR011990 TPR-like_helical_dom_sf Gene3D 393 464
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 541 575
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 435 469
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 330 364
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 470 504
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 505 540
IPR002885 Pentatricopeptide_rpt TIGRFAM 333 366
IPR002885 Pentatricopeptide_rpt TIGRFAM 367 401
IPR002885 Pentatricopeptide_rpt TIGRFAM 299 324
IPR002885 Pentatricopeptide_rpt TIGRFAM 544 574
IPR002885 Pentatricopeptide_rpt TIGRFAM 438 471
IPR002885 Pentatricopeptide_rpt TIGRFAM 507 542
IPR002885 Pentatricopeptide_rpt TIGRFAM 473 505
IPR002885 Pentatricopeptide_rpt TIGRFAM 403 436
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 541 575
IPR011990 TPR-like_helical_dom_sf Gene3D 167 324
IPR011990 TPR-like_helical_dom_sf Gene3D 325 392
IPR011990 TPR-like_helical_dom_sf Gene3D 393 464
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 435 469
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 505 540
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 470 504
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 330 364
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 400 434
IPR011990 TPR-like_helical_dom_sf Gene3D 465 630
IPR002885 Pentatricopeptide_rpt Pfam 329 377
IPR002885 Pentatricopeptide_rpt Pfam 469 516
IPR002885 Pentatricopeptide_rpt Pfam 399 446
IPR002885 Pentatricopeptide_rpt Pfam 267 293
IPR002885 Pentatricopeptide_rpt Pfam 544 572
IPR002885 Pentatricopeptide_rpt Pfam 299 324
IPR002885 Pentatricopeptide_rpt Pfam 229 258
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 365 399

No CAZYmes available for this sequence

No external refs found!