1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d038061_T001

Zm00001d038061_T001


Description : EF hand calcium-binding protein family


Gene families : OG_01_0003370 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003370_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d038061_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d038061_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_12
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_234


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 139 151
IPR002048 EF_hand_dom Pfam 58 117
IPR002048 EF_hand_dom Pfam 128 191
IPR002048 EF_hand_dom CDD 130 191
IPR002048 EF_hand_dom SMART 166 194
IPR002048 EF_hand_dom SMART 92 120
IPR002048 EF_hand_dom SMART 56 84
IPR002048 EF_hand_dom SMART 130 158
IPR002048 EF_hand_dom ProSiteProfiles 126 161
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 101 113
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 65 77
IPR011992 EF-hand-dom_pair SUPERFAMILY 38 192
IPR002048 EF_hand_dom ProSiteProfiles 162 197
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 175 187
IPR002048 EF_hand_dom ProSiteProfiles 52 87
IPR002048 EF_hand_dom CDD 56 117
IPR002048 EF_hand_dom ProSiteProfiles 88 123
IPR002048 EF_hand_dom ProSiteProfiles 162 197
IPR011992 EF-hand-dom_pair SUPERFAMILY 38 192
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 101 113
IPR002048 EF_hand_dom Pfam 128 191
IPR002048 EF_hand_dom Pfam 56 117
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 65 77
IPR002048 EF_hand_dom ProSiteProfiles 52 87
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 175 187
IPR002048 EF_hand_dom SMART 166 194
IPR002048 EF_hand_dom SMART 92 120
IPR002048 EF_hand_dom SMART 56 84
IPR002048 EF_hand_dom SMART 130 158
IPR002048 EF_hand_dom CDD 130 191
IPR002048 EF_hand_dom ProSiteProfiles 88 123
IPR002048 EF_hand_dom ProSiteProfiles 126 161
IPR002048 EF_hand_dom CDD 56 117
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 139 151

No CAZYmes available for this sequence

No external refs found!