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  5. Zm00001d038166_T001

Zm00001d038166_T001


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0011187 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011187_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d038166_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d038166_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_103
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_184


Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 280 327
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 279 313
IPR011990 TPR-like_helical_dom_sf Gene3D 403 530
IPR044179 PPR5-like PANTHER 84 527
IPR011990 TPR-like_helical_dom_sf Gene3D 274 342
IPR011990 TPR-like_helical_dom_sf Gene3D 120 273
IPR002885 Pentatricopeptide_rpt NCBIfam 282 315
IPR002885 Pentatricopeptide_rpt Pfam 206 256
IPR002885 Pentatricopeptide_rpt TIGRFAM 282 315
IPR002885 Pentatricopeptide_rpt Pfam 206 256
IPR011990 TPR-like_helical_dom_sf Gene3D 274 342
IPR011990 TPR-like_helical_dom_sf Gene3D 120 273
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 279 313
IPR044179 PPR5-like PANTHER 80 530
IPR002885 Pentatricopeptide_rpt Pfam 280 326
IPR011990 TPR-like_helical_dom_sf Gene3D 403 530

No CAZYmes available for this sequence

No external refs found!