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  5. Zm00001d038773_T002

Zm00001d038773_T002


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0006197 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006197_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d038773_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d038773_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_96
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_24


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 439 545
IPR011990 TPR-like_helical_dom_sf Gene3D 156 214
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 483 513
IPR002885 Pentatricopeptide_rpt Pfam 613 661
IPR002885 Pentatricopeptide_rpt Pfam 350 382
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 514 548
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 156 190
IPR046848 E_motif Pfam 731 793
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 614 648
IPR011990 TPR-like_helical_dom_sf Gene3D 318 437
IPR011990 TPR-like_helical_dom_sf Gene3D 226 317
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 289 323
IPR002885 Pentatricopeptide_rpt NCBIfam 159 187
IPR002885 Pentatricopeptide_rpt NCBIfam 127 157
IPR002885 Pentatricopeptide_rpt NCBIfam 516 549
IPR002885 Pentatricopeptide_rpt NCBIfam 99 121
IPR002885 Pentatricopeptide_rpt NCBIfam 291 314
IPR002885 Pentatricopeptide_rpt NCBIfam 616 650
IPR002885 Pentatricopeptide_rpt NCBIfam 189 221
IPR002885 Pentatricopeptide_rpt NCBIfam 485 510
IPR002885 Pentatricopeptide_rpt NCBIfam 353 379
IPR002885 Pentatricopeptide_rpt Pfam 127 156
IPR002885 Pentatricopeptide_rpt Pfam 291 314
IPR002885 Pentatricopeptide_rpt Pfam 189 218
IPR002885 Pentatricopeptide_rpt Pfam 325 349
IPR002885 Pentatricopeptide_rpt Pfam 99 122
IPR002885 Pentatricopeptide_rpt Pfam 159 187
IPR002885 Pentatricopeptide_rpt Pfam 385 413
IPR002885 Pentatricopeptide_rpt Pfam 516 543
IPR002885 Pentatricopeptide_rpt Pfam 40 60
IPR002885 Pentatricopeptide_rpt Pfam 66 85
IPR002885 Pentatricopeptide_rpt Pfam 485 511
IPR032867 DYW_dom Pfam 829 918
IPR011990 TPR-like_helical_dom_sf Gene3D 660 817
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 649 684
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 63 97
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 125 155
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 351 385
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 286 773
IPR011990 TPR-like_helical_dom_sf Gene3D 30 155
IPR011990 TPR-like_helical_dom_sf Gene3D 548 659
IPR032867 DYW_dom Pfam 787 911
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 63 97
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 125 155
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 483 513
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 156 190
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 351 385
IPR002885 Pentatricopeptide_rpt Pfam 350 382
IPR002885 Pentatricopeptide_rpt Pfam 614 661
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 286 773
IPR011990 TPR-like_helical_dom_sf Gene3D 439 545
IPR011990 TPR-like_helical_dom_sf Gene3D 156 214
IPR002885 Pentatricopeptide_rpt Pfam 325 349
IPR002885 Pentatricopeptide_rpt Pfam 40 60
IPR002885 Pentatricopeptide_rpt Pfam 127 156
IPR002885 Pentatricopeptide_rpt Pfam 757 783
IPR002885 Pentatricopeptide_rpt Pfam 159 187
IPR002885 Pentatricopeptide_rpt Pfam 516 543
IPR002885 Pentatricopeptide_rpt Pfam 291 314
IPR002885 Pentatricopeptide_rpt Pfam 385 413
IPR002885 Pentatricopeptide_rpt Pfam 99 122
IPR002885 Pentatricopeptide_rpt Pfam 66 85
IPR002885 Pentatricopeptide_rpt Pfam 189 218
IPR002885 Pentatricopeptide_rpt Pfam 485 511
IPR002885 Pentatricopeptide_rpt TIGRFAM 127 157
IPR002885 Pentatricopeptide_rpt TIGRFAM 189 221
IPR002885 Pentatricopeptide_rpt TIGRFAM 485 510
IPR002885 Pentatricopeptide_rpt TIGRFAM 159 187
IPR002885 Pentatricopeptide_rpt TIGRFAM 516 549
IPR002885 Pentatricopeptide_rpt TIGRFAM 99 121
IPR002885 Pentatricopeptide_rpt TIGRFAM 616 650
IPR002885 Pentatricopeptide_rpt TIGRFAM 353 379
IPR002885 Pentatricopeptide_rpt TIGRFAM 291 314
IPR011990 TPR-like_helical_dom_sf Gene3D 30 155
IPR011990 TPR-like_helical_dom_sf Gene3D 548 659
IPR011990 TPR-like_helical_dom_sf Gene3D 318 437
IPR011990 TPR-like_helical_dom_sf Gene3D 226 317
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 649 684
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 289 323
IPR011990 TPR-like_helical_dom_sf Gene3D 660 817
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 514 548
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 614 648

No CAZYmes available for this sequence

No external refs found!