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  5. Zm00001d038875_T001

Zm00001d038875_T001


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0001971 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001971_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d038875_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d038875_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_149
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_130


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000743 Glyco_hydro_28 Pfam 57 319
IPR000743 Glyco_hydro_28 Pfam 372 432
IPR012334 Pectin_lyas_fold Gene3D 22 463
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 29 326
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 370 449
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 370 449
IPR012334 Pectin_lyas_fold Gene3D 22 463
IPR000743 Glyco_hydro_28 Pfam 57 319
IPR000743 Glyco_hydro_28 Pfam 372 431
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 29 326
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 472 7.3e-80 54 434
No external refs found!