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  5. Zm00001d038877_T001

Zm00001d038877_T001


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0005135 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005135_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d038877_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d038877_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_185
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_230


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0048188 Set1C/COMPASS complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR020472 G-protein_beta_WD-40_rep PRINTS 130 144
IPR020472 G-protein_beta_WD-40_rep PRINTS 260 274
IPR020472 G-protein_beta_WD-40_rep PRINTS 41 55
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 242 313
IPR001680 WD40_rpt ProSiteProfiles 241 282
IPR001680 WD40_rpt ProSiteProfiles 111 145
IPR037867 Swd2/WDR82 PANTHER 6 317
IPR001680 WD40_rpt SMART 15 54
IPR001680 WD40_rpt SMART 188 229
IPR001680 WD40_rpt SMART 104 143
IPR001680 WD40_rpt SMART 276 313
IPR001680 WD40_rpt SMART 234 273
IPR001680 WD40_rpt ProSiteProfiles 22 63
IPR019775 WD40_repeat_CS ProSitePatterns 260 274
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 14 241
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 17 307
IPR001680 WD40_rpt Pfam 251 273
IPR001680 WD40_rpt Pfam 25 54
IPR001680 WD40_rpt Pfam 106 143
IPR001680 WD40_rpt ProSiteProfiles 22 63
IPR020472 G-protein_beta_WD-40_rep PRINTS 130 144
IPR020472 G-protein_beta_WD-40_rep PRINTS 260 274
IPR020472 G-protein_beta_WD-40_rep PRINTS 41 55
IPR037867 Swd2/WDR82 PANTHER 5 317
IPR001680 WD40_rpt SMART 15 54
IPR001680 WD40_rpt SMART 188 229
IPR001680 WD40_rpt SMART 104 143
IPR001680 WD40_rpt SMART 276 313
IPR001680 WD40_rpt SMART 234 273
IPR019775 WD40_repeat_CS ProSitePatterns 260 274
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 14 241
IPR001680 WD40_rpt ProSiteProfiles 111 145
IPR001680 WD40_rpt ProSiteProfiles 241 282
IPR001680 WD40_rpt Pfam 106 143
IPR001680 WD40_rpt Pfam 28 54
IPR001680 WD40_rpt Pfam 249 273
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 17 307
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 242 313

No CAZYmes available for this sequence

No external refs found!