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  5. Zm00001d039072_T005

Zm00001d039072_T005


Description : SPA1-related 2


Gene families : OG_01_0002642 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002642_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d039072_T005
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d039072_T005
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_250


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0009640 photomorphogenesis ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 788 1122
IPR001680 WD40_rpt ProSiteProfiles 983 1023
IPR001680 WD40_rpt ProSiteProfiles 878 902
IPR001680 WD40_rpt SMART 805 843
IPR001680 WD40_rpt SMART 976 1014
IPR001680 WD40_rpt SMART 1025 1064
IPR001680 WD40_rpt SMART 854 893
IPR001680 WD40_rpt SMART 933 972
IPR001680 WD40_rpt SMART 896 931
IPR001680 WD40_rpt SMART 1081 1120
IPR044630 SPA1/2/3/4 PANTHER 20 1122
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 815 1119
IPR019775 WD40_repeat_CS ProSitePatterns 880 894
IPR011009 Kinase-like_dom_sf SUPERFAMILY 328 605
IPR019775 WD40_repeat_CS ProSitePatterns 1001 1015
IPR001680 WD40_rpt Pfam 866 893
IPR001680 WD40_rpt Pfam 902 933
IPR001680 WD40_rpt Pfam 982 1014
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 788 1122
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 815 1119
IPR001680 WD40_rpt SMART 976 1014
IPR001680 WD40_rpt SMART 805 843
IPR001680 WD40_rpt SMART 1025 1064
IPR001680 WD40_rpt SMART 854 893
IPR001680 WD40_rpt SMART 933 972
IPR001680 WD40_rpt SMART 896 931
IPR001680 WD40_rpt SMART 1081 1120
IPR001680 WD40_rpt ProSiteProfiles 983 1023
IPR019775 WD40_repeat_CS ProSitePatterns 1001 1015
IPR019775 WD40_repeat_CS ProSitePatterns 880 894
IPR001680 WD40_rpt ProSiteProfiles 878 902
IPR001680 WD40_rpt Pfam 984 1014
IPR044630 SPA1/2/3/4 PANTHER 12 1122
IPR011009 Kinase-like_dom_sf SUPERFAMILY 328 605

No CAZYmes available for this sequence

No external refs found!