Zm00001d039179_T001

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0005289 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005289_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d039179_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d039179_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_134
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_202

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045215	PPR_prot_At1g15510	PANTHER	218	444
IPR002885	Pentatricopeptide_rpt	NCBIfam	309	335
IPR002885	Pentatricopeptide_rpt	Pfam	343	370
IPR002885	Pentatricopeptide_rpt	Pfam	309	336
IPR002885	Pentatricopeptide_rpt	Pfam	218	235
IPR011990	TPR-like_helical_dom_sf	Gene3D	215	450
IPR032867	DYW_dom	Pfam	487	578
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	306	336
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	306	336
IPR032867	DYW_dom	Pfam	483	568
IPR045215	PPR_prot_At1g15510	PANTHER	9	573
IPR002885	Pentatricopeptide_rpt	TIGRFAM	309	335
IPR011990	TPR-like_helical_dom_sf	Gene3D	215	450
IPR002885	Pentatricopeptide_rpt	Pfam	218	235
IPR002885	Pentatricopeptide_rpt	Pfam	343	370
IPR002885	Pentatricopeptide_rpt	Pfam	309	336

No CAZYmes available for this sequence

External Links

No external refs found!