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  5. Zm00001d039211_T006

Zm00001d039211_T006


Description : WD-40 repeat family protein / notchless protein, putative


Gene families : OG_01_0003288 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003288_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d039211_T006
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d039211_T006
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_114
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_173


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 213 259
IPR001680 WD40_rpt ProSiteProfiles 464 497
IPR019775 WD40_repeat_CS ProSitePatterns 121 135
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 156 497
IPR012972 NLE Pfam 9 69
IPR001680 WD40_rpt ProSiteProfiles 380 421
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 86 150
IPR019775 WD40_repeat_CS ProSitePatterns 278 292
IPR001680 WD40_rpt SMART 294 369
IPR001680 WD40_rpt SMART 164 202
IPR001680 WD40_rpt SMART 373 412
IPR001680 WD40_rpt SMART 415 454
IPR001680 WD40_rpt SMART 95 134
IPR001680 WD40_rpt SMART 457 496
IPR001680 WD40_rpt SMART 206 250
IPR001680 WD40_rpt SMART 253 291
IPR001680 WD40_rpt ProSiteProfiles 422 463
IPR001680 WD40_rpt ProSiteProfiles 170 211
IPR001680 WD40_rpt ProSiteProfiles 102 143
IPR020472 G-protein_beta_WD-40_rep PRINTS 441 455
IPR020472 G-protein_beta_WD-40_rep PRINTS 121 135
IPR020472 G-protein_beta_WD-40_rep PRINTS 399 413
IPR001680 WD40_rpt ProSiteProfiles 260 300
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 94 495
IPR019775 WD40_repeat_CS ProSitePatterns 441 455
IPR001632 Gprotein_B PRINTS 422 438
IPR001632 Gprotein_B PRINTS 441 455
IPR001632 Gprotein_B PRINTS 478 495
IPR001680 WD40_rpt Pfam 255 290
IPR001680 WD40_rpt Pfam 416 454
IPR001680 WD40_rpt Pfam 376 412
IPR001680 WD40_rpt Pfam 209 250
IPR001680 WD40_rpt Pfam 461 495
IPR001680 WD40_rpt Pfam 295 327
IPR001680 WD40_rpt Pfam 173 202
IPR001680 WD40_rpt Pfam 97 134
IPR001680 WD40_rpt ProSiteProfiles 380 421
IPR001632 Gprotein_B PRINTS 422 438
IPR001632 Gprotein_B PRINTS 441 455
IPR001632 Gprotein_B PRINTS 478 495
IPR019775 WD40_repeat_CS ProSitePatterns 278 292
IPR019775 WD40_repeat_CS ProSitePatterns 441 455
IPR020472 G-protein_beta_WD-40_rep PRINTS 441 455
IPR020472 G-protein_beta_WD-40_rep PRINTS 121 135
IPR020472 G-protein_beta_WD-40_rep PRINTS 399 413
IPR001680 WD40_rpt ProSiteProfiles 260 300
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 156 497
IPR001680 WD40_rpt ProSiteProfiles 422 463
IPR001680 WD40_rpt ProSiteProfiles 170 211
IPR001680 WD40_rpt ProSiteProfiles 464 497
IPR001680 WD40_rpt SMART 294 369
IPR001680 WD40_rpt SMART 164 202
IPR001680 WD40_rpt SMART 373 412
IPR001680 WD40_rpt SMART 415 454
IPR001680 WD40_rpt SMART 95 134
IPR001680 WD40_rpt SMART 206 250
IPR001680 WD40_rpt SMART 457 496
IPR001680 WD40_rpt SMART 253 291
IPR001680 WD40_rpt ProSiteProfiles 102 143
IPR012972 NLE Pfam 9 68
IPR001680 WD40_rpt Pfam 254 290
IPR001680 WD40_rpt Pfam 463 495
IPR001680 WD40_rpt Pfam 213 250
IPR001680 WD40_rpt Pfam 171 202
IPR001680 WD40_rpt Pfam 417 454
IPR001680 WD40_rpt Pfam 295 368
IPR001680 WD40_rpt Pfam 97 134
IPR001680 WD40_rpt Pfam 378 412
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 94 495
IPR019775 WD40_repeat_CS ProSitePatterns 121 135
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 86 150
IPR001680 WD40_rpt ProSiteProfiles 213 259

No CAZYmes available for this sequence

No external refs found!