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  5. Zm00001d039278_T002

Zm00001d039278_T002


Description : Synaptobrevin family protein


Gene families : OG_01_0002661 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002661_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d039278_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d039278_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_258
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_20


Type GO Term Name Evidence Source
MF GO:0005484 SNAP receptor activity ISM GOs from InterProScan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport ISM GOs from InterProScan
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR042855 V_SNARE_CC Pfam 156 236
IPR010908 Longin_dom CDD 5 150
IPR010908 Longin_dom ProSiteProfiles 6 143
IPR042855 V_SNARE_CC ProSiteProfiles 158 218
IPR010908 Longin_dom SMART 35 142
IPR011012 Longin-like_dom_sf SUPERFAMILY 1 150
IPR010908 Longin_dom Pfam 36 140
IPR044565 Sec22 PANTHER 1 241
IPR010908 Longin_dom CDD 5 150
IPR042855 V_SNARE_CC Pfam 156 236
IPR010908 Longin_dom ProSiteProfiles 6 143
IPR044565 Sec22 PANTHER 1 64
IPR044565 Sec22 PANTHER 87 241
IPR010908 Longin_dom SMART 35 142
IPR042855 V_SNARE_CC ProSiteProfiles 158 218
IPR011012 Longin-like_dom_sf SUPERFAMILY 1 150
IPR010908 Longin_dom Pfam 36 140

No CAZYmes available for this sequence

No external refs found!