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  5. Zm00001d039292_T001

Zm00001d039292_T001


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0039804 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0039804_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d039292_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d039292_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_138
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_17


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt SMART 348 387
IPR001680 WD40_rpt SMART 98 135
IPR001680 WD40_rpt SMART 399 445
IPR001680 WD40_rpt SMART 291 341
IPR001680 WD40_rpt SMART 245 284
IPR001680 WD40_rpt SMART 204 242
IPR001680 WD40_rpt ProSiteProfiles 210 251
IPR001680 WD40_rpt ProSiteProfiles 252 283
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 287 449
IPR045182 JINGUBANG-like PANTHER 65 447
IPR020472 G-protein_beta_WD-40_rep PRINTS 229 243
IPR020472 G-protein_beta_WD-40_rep PRINTS 374 388
IPR020472 G-protein_beta_WD-40_rep PRINTS 271 285
IPR001680 WD40_rpt Pfam 212 241
IPR001680 WD40_rpt Pfam 401 444
IPR001680 WD40_rpt Pfam 355 386
IPR001680 WD40_rpt Pfam 246 283
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 95 286
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 107 446
IPR001680 WD40_rpt ProSiteProfiles 355 386
IPR001680 WD40_rpt SMART 348 387
IPR001680 WD40_rpt SMART 98 135
IPR001680 WD40_rpt SMART 399 445
IPR001680 WD40_rpt SMART 291 341
IPR001680 WD40_rpt SMART 245 284
IPR001680 WD40_rpt SMART 204 242
IPR001680 WD40_rpt Pfam 355 386
IPR001680 WD40_rpt Pfam 401 444
IPR001680 WD40_rpt Pfam 246 283
IPR001680 WD40_rpt ProSiteProfiles 355 386
IPR001680 WD40_rpt ProSiteProfiles 252 283
IPR045182 JINGUBANG-like PANTHER 2 528
IPR020472 G-protein_beta_WD-40_rep PRINTS 229 243
IPR020472 G-protein_beta_WD-40_rep PRINTS 374 388
IPR020472 G-protein_beta_WD-40_rep PRINTS 271 285
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 95 286
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 287 449
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 107 446
IPR001680 WD40_rpt ProSiteProfiles 210 251

No CAZYmes available for this sequence

No external refs found!