Zm00001d039400_T002

Description : RNA binding (RRM/RBD/RNP motifs) family protein

Gene families : OG_01_0008375 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008375_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d039400_T002
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d039400_T002
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_293
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_125

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	acyltransferase activity	None	Extended
MF	GO:0016755	aminoacyltransferase activity	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
CC	GO:0030014	CCR4-NOT complex	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR039780	Mot2	PANTHER	1	887
IPR000504	RRM_dom	Pfam	133	190
IPR001841	Znf_RING	ProSiteProfiles	9	52
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	114	192
IPR003954	RRM_dom_euk	SMART	114	192
IPR039515	NOT4_mRING-HC-C4C4	CDD	7	53
IPR013083	Znf_RING/FYVE/PHD	Gene3D	1	71
IPR035979	RBD_domain_sf	SUPERFAMILY	111	206
IPR034261	CNOT4_RRM	CDD	108	203
IPR000504	RRM_dom	ProSiteProfiles	113	196
IPR034261	CNOT4_RRM	CDD	108	203
IPR000504	RRM_dom	ProSiteProfiles	113	196
IPR035979	RBD_domain_sf	SUPERFAMILY	111	206
IPR000504	RRM_dom	Pfam	133	190
IPR039515	NOT4_mRING-HC-C4C4	CDD	9	53
IPR039780	Mot2	PANTHER	1	546
IPR039780	Mot2	PANTHER	547	910
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	114	192
IPR013083	Znf_RING/FYVE/PHD	Gene3D	1	71
IPR003954	RRM_dom_euk	SMART	114	192
IPR001841	Znf_RING	ProSiteProfiles	9	52

No CAZYmes available for this sequence

External Links

No external refs found!